Open in new window / Try shogun cloud
--- Log opened Fri Dec 14 00:00:38 2012
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shogun-buildbotbuild #179 of nightly_none is complete: Failure [failed compile]  Build details are at
shogun-buildbotbuild #217 of nightly_default is complete: Failure [failed compile]  Build details are at
shogun-buildbotbuild #174 of nightly_all is complete: Success [build successful]  Build details are at
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erin_Hi all, I very much appreciate your work in making such a great toolbox and I am looking forward to work and experiment on it. But I am trying to compile shogun in my matlab and i am very much stuck and troubled. I particularly followed the steps written in the installation page10:10
erin_./configure --interfaces=matlab_static make make install10:11
erin_But I never even reached the 'make' part10:11
erin_particularly it had an error10:12
erin_Checking for Matlab developer support (-lmx -lmex -lmat) ... no10:12
erin_cc -I. -I..  -fPIC -march=pentium3 -mtune=pentium3 -pthread ./configure-10124-504.c -o ./configure-7655-504.o  -mno-cygwin -DMATLAB_MEX_FILE -I/MATLAB/R2011b/bin/matlab.exe/extern/include -shared -mno-cygwin -Wl,--version-script, -Wl,--rpath-link,/MATLAB/R2011b/bin/matlab.exe/extern/lib/win32 -L/MATLAB/R2011b/bin/matlab.exe/bin/win32 -lmx -lmex -lmat -lm -pthread -lz -lbz210:12
erin_I have searched some similar problems regarding this particularly  as to why it directs to this type of address: MATLAB/R2011b/bin/matlab.exe/bin/win3210:12
erin_so my query is  Is it compatible to compile shogun for a win64 and matlab 2011 64-bit?10:17
wikingerin_: still here?10:41
wikingok so u r using windows right?10:42
erin_yes i am10:42
wikingcan u compile shogun without matlab_modular?10:42
wikingor matlab_static10:43
wikingso i mean without matlab interface?10:43
wikingbecause i think you'll need cygwin to compile shogun for windows10:44
erin_i am using cygwin... it was succesful but not for the matlab_static10:44
erin_ libshogun and the following interfaces: cmdline_static python_static10:44
wikingyeah use python_module if possilb10:45
wikingand cygwin compiled it for 64 bits?10:45
wikingok then there's a problem with the configure script10:46
erin_so it is not possible for matlab? i dont know how to use python -_-10:46
wikingi think it should be possible10:46
wikingjust needs some fixing10:46
wikingas it hasn't been prepared to be used with 64 bits matlab10:46
wikingbut that doesn't mean that it's not possible10:47
erin_i see... but for the 32-bit it should work right?10:47
wikingdo you have a directory /MATLAB/R2011b/bin/matlab.exe/bin/win64 ?10:47
wikingor soemthing like that?10:47
erin_i don't.. that is quite confusing actually..10:48
wikingwell it looks like for me that it should work for 32 bits... but as said i never tried it myself before...10:48
wikingso i guess you have /MATLAB/R2011b/bin right?10:48
wikingand what do you have in that directory?10:49
wikingcan u please copy-paste it here?10:49
erin_insttype.ini  lcdata.xml  lcdata.xsd  lcdata_utf8.xml  license.txt  m3iregistry  matlab.bat  matlab.exe  mex.bat  mexext.bat  registry  util  wi10:50
wikingmmm that's interesting10:50
wikingah so u have there win6410:50
erin_yup! it has a win64 folder10:51
wikingthen we just need to fix a little bit10:51
wikingand it might even work ;)10:51
wikinghow does your ./configure line looks like now?10:51
wikinghow do you call it?10:52
erin_same as that of the installation page10:52
erin_./configure --interfaces=matlab_static10:52
wikingok so there's actually seems like there's 2 problems10:54
wiking1 how the matlab_dir is detected10:54
wiking2) that it tries to use win32 instead win6410:54
wikingthe former we can fix quite fast10:54
erin_that's great! meanwhile.. ill be trying it on win32 and update you10:55
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erin_wow i appreciate your prompt response on the matter... :)10:56
wikingno worries10:57
wikinghope that we can figure it out for you10:57
wikingmy concern here rather the first problem10:57
wikingthe detection of the path for matlab10:57
erin_ok ill be back next time.. ill go first to my sort-of meeting... thanks again!10:57
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wikinglol ok10:58
wikingi was just about to ask u to do some stuff... ;)10:58
wikingi guess later10:58
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nona642Hi everyone11:58
nona642anybody works with weighted degree position string kernel before?11:58
sonne|worknona642: lets say yes ;)11:59
Guest71666I have problems with setting shift_len12:02
Guest71666I am sing R static and I assume if the degree is for example 20 shift_len has to be a vector of length 2012:03
sonne|workcould you be a bit more specific12:03
* sonne|work lunch time12:03
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Guest71666Have to go.13:17
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sonne|workGuest71666: yes exactly13:45
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erin_@wiking and others as well, I tried installing shogun in win32  for matlab and still produce the same error14:24
erin_Checking for Matlab developer support (-lmx -lmex -lmat) ... no  Error: could not find matlab developer files (e.g. mex.h)  Check configure.log if you do not understand why it failed. The last 20 lines of configure.log are shown below  ##########################################  ============ Checking for Matlab developer support (-lmx -lmex -lmat) ============  #include <mex.h> void mexFunction(int nlhs,mxArray *plhs[],int nrhs,const m14:24
erin_void) { return 0; }  cc -I. -I..   -fPIC -march=native -mtune=native -pthread ./configure-28774-7852.c -o ./configure-28247-7852.o  -mno-cygwin -DMATLAB_MEX_FILE -I/cygdrive/c/Program Files/MATLAB/R2010a/bin/matlab.exe/extern/include -shared -mno-cygwin -Wl,--version-script, -Wl,--rpath-link,/cygdrive/c/Program Files/MATLAB/R2010a/bin/matlab.exe/extern/lib/win32 -L/cygdrive/c/Program Files/MATLAB/R2010a/bin/matlab.exe/bi14:25
erin_apparently it also search at the wrong directory: Program Files/MATLAB/R2010a/bin/matlab.exe/bin/win3214:26
sonne|workerin_: I no longer have access to matlab so I cannot really help here14:30
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erin_wiking: i started to fix the configure file but still didn't work15:31
erin_first, i change mat matlab dir to a direct path15:31
erin_second, i changed matlab developer supper to libmx libmex and  this is the current look:15:33
erin_cc -I. -I..   -fPIC -march=native -mtune=native -pthread ./configure-23895-6208.c -o ./configure-5220-6208.o  -mno-cygwin -DMATLAB_MEX_FILE -I/cygdrive/c/Program Files/MATLAB/R2010a/extern/include -shared -mno-cygwin -Wl,--version-script, -Wl,--rpath-link,/cygdrive/c/Program Files/MATLAB/R2010a/extern/lib/win32 -L/cygdrive/c/Program Files/MATLAB/R2010a/bin/win32 -libmx -libmex -libmat -lm -pthread -lhdf5 -llapack -lblas 15:33
erin_has been removed; use a mingw-targeted cross-compiler.15:34
wikingerin_: yeah because you still need to change to win64... if u r trying to compile it for 64bit15:34
erin_i am working it on the win32 now15:36
erin_so it should be right :s15:36
wikingthen yeah15:38
wikingwhat is the error on this15:38
erin_same, Checking for Matlab developer support (-libmx -libmex -libmat) ... no  Error: could not find matlab developer files (e.g. mex.h)15:39
erin_this is now the current command15:39
erin_cc -I. -I..   -fPIC -march=native -mtune=native -pthread ./configure-23895-6208.c -o ./configure-5220-6208.o  -mno-cygwin -DMATLAB_MEX_FILE -I/cygdrive/c/Program Files/MATLAB/R2010a/extern/include -shared -mno-cygwin -Wl,--version-script, -Wl,--rpath-link,/cygdrive/c/Program Files/MATLAB/R2010a/extern/lib/win32 -L/cygdrive/c/Program Files/MATLAB/R2010a/bin/win32 -libmx -libmex -libmat -lm -pthread -lhdf5 -llapack -lblas 15:39
wikingerin_: extern/include/mex.h15:41
wikingdon't u have this?15:41
wiking/cygdrive/c/Program Files/MATLAB/R2010a/extern/include/mex.h15:42
wikingthere should be something like this15:42
wikingbut i thiiiink your problem is that the path is not escaped15:42
wiking/cygdrive/c/Program Files/MATLAB/R2010a/extern/include should be15:42
wiking/cygdrive/c/Program\ Files/MATLAB/R2010a/extern/include/mex.h15:42
wikingi mean: /cygdrive/c/Program\ Files/MATLAB/R2010a/extern/include15:42
erin_i do have it.. oh right! ill try now15:43
erin_still same.. i'm also bothered with this error15:46
erin_cc: The -mno-cygwin flag has been removed; use a mingw-targeted cross-compiler.15:46
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erin_wiking, you are right about the path.. well, one of the problems.. basically I lowered the compiler version so the -mno-cygwin is not there anymore.. but now it has these16:42
erin_cc -I. -I..   -fPIC -march=pentium3 -mtune=pentium3 -pthread ./configure-8745-4356.c -o ./configure-27005-4356.o  -mno-cygwin -DMATLAB_MEX_FILE -I/cygdrive/c/Program\ Files/MATLAB/R2010a/extern/include -shared -mno-cygwin -Wl,--version-script, -Wl,--rpath-link,/cygdrive/c/Program\ Files/MATLAB/R2010a/extern/lib/win32 -L/cygdrive/c/Program\ Files/MATLAB/R2010a/bin/win32 -libmx -libmex -libmat -lm -pthread -lhdf5 -llapack 16:42
erin_ATLAB/R2010a/extern/include: No such file or directory cc: Files/MATLAB/R2010a/extern/lib/win32: No such file or directory cc: Files/MATLAB/R2010a/bin/win32: No such file or directory cc: unrecognized option `-pthread' cc: unrecognized option `-pthread' ./configure-8745-4356.c:1: warning: -fPIC ignored for target (all code is position independent) ./configure-8745-4356.c:1:17: mex.h: No such file or directory ./configure-8745-4356.c:2:16:42
erin_Array" no object file created16:42
erin_i can't seem to fix the path and I can't afford to move my Matlab to another directory.. anyway i am very tired... thanks for your help!16:44
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n4nd0this whole workshop idea sounds awesome18:35
blackburnvodka party18:35
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--- Log closed Sat Dec 15 00:00:38 2012