Open in new window / Try shogun cloud
--- Log opened Mon Mar 04 00:00:58 2013
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shogun-notifier-shogun: Sergey Lisitsyn :master * 2717831 / src/shogun/lib/tapkee/ (26 files): https://github.com/shogun-toolbox/shogun/commit/2717831d542a4cdda4b68ced2efff9d018ee85cf07:50
shogun-notifier-shogun: Updated tapkee library07:50
shogun-notifier-shogun:07:50
shogun-notifier-shogun: - Better parameters handling: proper invariants to avoid bugs07:50
shogun-notifier-shogun: - Better exceptions usage07:50
shogun-notifier-shogun: - Better naming of types07:50
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shogun-buildbot_build #272 of rpm1 - libshogun is complete: Success [build successful]  Build details are at http://www.shogun-toolbox.org/buildbot/builders/rpm1%20-%20libshogun/builds/27208:04
shogun-buildbot_build #262 of ubu1 - libshogun is complete: Success [build successful]  Build details are at http://www.shogun-toolbox.org/buildbot/builders/ubu1%20-%20libshogun/builds/26208:22
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shogun-buildbot_build #861 of deb3 - modular_interfaces is complete: Failure [failed test python_modular]  Build details are at http://www.shogun-toolbox.org/buildbot/builders/deb3%20-%20modular_interfaces/builds/861  blamelist: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>08:29
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blackburnn4nd0: the magic doesn't work with VS :(10:10
n4nd0blackburn: too bad10:14
n4nd0it crashes?10:14
n4nd0blackburn: some guards if in windows maybe?10:15
blackburnn4nd0: I think I find a way10:15
blackburnn4nd0: fixing compilation on windows now10:16
n4nd0gl10:16
blackburnwhoa10:17
blackburnbuilt10:17
n4nd0hurray!10:17
blackburnn4nd0: it fails on runtime though :D10:22
n4nd0damn it10:23
n4nd0blackburn: what's the problem?10:23
blackburnn4nd0: parser I guess10:23
blackburnn4nd0: could you please paste swissroll data somewhere?10:24
n4nd0blackburn: sure10:25
n4nd0blackburn: 1000 is fine?10:25
blackburnn4nd0: yes10:27
n4nd0blackburn: http://pastebin.com/7P8YGuUa10:28
blackburnthanks10:29
n4nd0you are welcome10:29
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alexlovesdatablackburn: sonne: Did I do a pull request?10:40
alexlovesdataIt looks in github like  I did not so any??10:40
n4nd0hey alexlovesdata10:44
n4nd0I think you did it10:44
n4nd0check here10:44
n4nd0https://github.com/shogun-toolbox/shogun/pull/90110:44
n4nd0alexlovesdata: is it that one the one you were looking for?10:44
alexlovesdataye ... thank Fernando ... I just did not see the pull request in github and so I wondered whether I was dreaming two nights ago at 4 am10:45
n4nd0hehe10:45
n4nd0alexlovesdata: maybe you were looking in your fork of shogun here10:46
n4nd0https://github.com/AlexBinder/shogun10:46
n4nd0while the pull request appears in the repository where you want to introduce the code, in this cade the one by shogun-toolbox user10:46
alexlovesdatayes, I was looking there indeed ..10:46
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blackburnalexlovesdata: yeah - sorry I hadn't enough time to take a look11:41
blackburnn4nd0: okay covertree fails under VS 201211:43
n4nd0blackburn: shit11:45
blackburnn4nd0: brute method works though11:45
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n4nd0blackburn: any idea what is from the cover tree that makes it fail?12:45
blackburnn4nd0: will try to debug later12:45
blackburnn4nd0: could you please try to fix current build error?12:45
blackburnI have no linux around12:45
n4nd0blackburn: let me see12:45
blackburnit fails to link - I have done something wrong in CMakeLists12:46
blackburnn4nd0: around line 30 :)12:47
n4nd0blackburn: last commit was it right?12:47
blackburnn4nd0: last commit was an atttempt to fix it12:48
n4nd0aham12:48
n4nd0blackburn: this is the error I get12:48
n4nd0cmake: error while loading shared libraries: libarchive.so.12: cannot open shared object file: No such file or directory12:48
blackburnehm12:49
blackburnnever seen that12:49
n4nd0blackburn: hehe so that was not the bug you meant?12:49
blackburnno12:49
blackburnn4nd0: https://travis-ci.org/lisitsyn/tapkee/jobs/522290012:50
n4nd0blackburn: or the error ^ must be someting mine, let me try12:50
blackburnn4nd0: missed dsaupd is the error (because target_link_libraries wasn't done properly for some reason)12:51
n4nd0just needed to update cmake, that's why the error I pasted12:52
n4nd0blackburn: mmmm make worked totally fine here12:54
blackburnn4nd0: cd build && rm -rf * && cmake .. && make ?12:55
n4nd0yep12:55
blackburnn4nd0: did you update?12:56
n4nd0Update CMakeLists.txt is the last commit I have12:56
n4nd0https://github.com/lisitsyn/tapkee/commits/master12:56
blackburnhmm okay travis is outdated12:56
blackburnthanks12:56
n4nd0blackburn: maybe it needs a make clean or the like in there?12:57
blackburnrm -rf * is total clean12:57
n4nd0I meant in travis12:57
n4nd0does it do that?12:57
blackburnah12:57
blackburnyes it cleans whole system12:58
blackburn:D12:58
n4nd0hehe ok12:58
blackburnyou may see it installs packages each time12:58
blackburnI expect there is a pool of workers which load image and start build12:58
n4nd0true12:58
n4nd0blackburn: so mmm can we make it work in travis somehow?12:59
blackburnworks12:59
n4nd0cool13:00
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shogun-notifier-shogun: Heiko Strathmann :master * ee46d69 / src/shogun/statistics/ (18 files): https://github.com/shogun-toolbox/shogun/commit/ee46d692854f976a0f7cd4e7b61ca26f1c0e809e14:28
shogun-notifier-shogun: updated documentation for kernel MMD two-sample testing14:28
shogun-notifier-shogun: Heiko Strathmann :master * c9ebee6 / src/shogun/statistics/ (18 files): https://github.com/shogun-toolbox/shogun/commit/c9ebee62f05c6ea6af63df1327c62c424612c3ef14:28
shogun-notifier-shogun: Merge pull request #902 from karlnapf/master14:28
shogun-notifier-shogun:14:28
shogun-notifier-shogun: Massive documentation update14:28
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shogun-buildbot_build #906 of deb1 - libshogun is complete: Failure [failed test]  Build details are at http://www.shogun-toolbox.org/buildbot/builders/deb1%20-%20libshogun/builds/906  blamelist: Heiko Strathmann <heiko.strathmann@gmail.com>14:34
shogun-buildbot_build #905 of deb1 - libshogun is complete: Failure [failed test]  Build details are at http://www.shogun-toolbox.org/buildbot/builders/deb1%20-%20libshogun/builds/905  blamelist: Heiko Strathmann <heiko.strathmann@gmail.com>14:40
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shogun-notifier-shogun: Heiko Strathmann :master * de8de4d / src/shogun/features/streaming/generators/GaussianBlobsDataGenerator.cpp: https://github.com/shogun-toolbox/shogun/commit/de8de4d6ba7cf92ae06959e1ba359f964371abd117:29
shogun-notifier-shogun: registered some parameters17:29
shogun-notifier-shogun: Heiko Strathmann :master * 8d02af9 / src/shogun/statistics/MMDKernelSelection.h: https://github.com/shogun-toolbox/shogun/commit/8d02af999d4cb92403cf9ba777974544feedb6b217:29
shogun-notifier-shogun: removed doxygen warning17:29
shogun-notifier-shogun: Heiko Strathmann :master * 4b3a255 / src/shogun/io/streaming/StreamingFileFromDenseFeatures.h: https://github.com/shogun-toolbox/shogun/commit/4b3a255f3cf562eb6883fb4817e244120b8fba1a17:29
shogun-notifier-shogun: removed warning17:29
shogun-notifier-shogun: Heiko Strathmann :master * ba3be92 / tests/unit/kernel/CustomKernel_unittest.cc: https://github.com/shogun-toolbox/shogun/commit/ba3be927e2fd70f9634dc9d6a06467a9dcf4413d17:29
shogun-notifier-shogun: removed unnecessary remove subset command17:29
shogun-notifier-shogun: Heiko Strathmann :master * cb17caa / tests/unit/statistics/MMDKernelSelectionCombMaxL2_unittest.cc: https://github.com/shogun-toolbox/shogun/commit/cb17caabf2eb22782decb63ee030c6c883349b1117:29
shogun-notifier-shogun: made test compile again17:29
shogun-notifier-shogun: Heiko Strathmann :master * 24ea0be / / (5 files): https://github.com/shogun-toolbox/shogun/commit/24ea0beaead39df3c6b6a68a78b77e6236f117ca17:29
shogun-notifier-shogun: Merge pull request #903 from karlnapf/master17:29
blackburnheiko: we should rename tests/unit to tests/heiko in the name of you17:32
shogun-buildbot_build #908 of deb1 - libshogun is complete: Failure [failed test]  Build details are at http://www.shogun-toolbox.org/buildbot/builders/deb1%20-%20libshogun/builds/908  blamelist: Heiko Strathmann <heiko.strathmann@gmail.com>17:33
heikoblackburn:  yes!!! :)17:33
shogun-buildbot_build #909 of deb1 - libshogun is complete: Success [build successful]  Build details are at http://www.shogun-toolbox.org/buildbot/builders/deb1%20-%20libshogun/builds/90917:34
heikoblackburn: I am almost done with my release critical stuff17:35
blackburnheiko: that's cool - I hope soeren will get back soon17:36
blackburnheiko: well, I am almost done with my stuff too17:37
heikoblackburn: nice!17:37
heikoblackburn: so no hunt warnings, write documentation :) This will be a good release!17:37
heikoblackburn: I just want to try some matlab examples17:38
blackburnheiko: I will try to prepare some unittests for dim reduction17:38
shogun-buildbot_build #907 of deb1 - libshogun is complete: Failure [failed test]  Build details are at http://www.shogun-toolbox.org/buildbot/builders/deb1%20-%20libshogun/builds/907  blamelist: Heiko Strathmann <heiko.strathmann@gmail.com>17:40
shogun-notifier-shogun: Heiko Strathmann :master * a86a0f3 / src/shogun/statistics/MMDKernelSelectionMedian.cpp: https://github.com/shogun-toolbox/shogun/commit/a86a0f37c6cb781be194fd1bfab76e96fe76580b17:58
shogun-notifier-shogun: fixed intendation17:58
shogun-notifier-shogun: Heiko Strathmann :master * 3dc5ac0 / examples/undocumented/python_modular/graphical/statistics_linear_time_mmd.py: https://github.com/shogun-toolbox/shogun/commit/3dc5ac0db43f0400ecb22f7c50664a6f407c8abf17:58
shogun-notifier-shogun: made example work again17:58
shogun-notifier-shogun: Heiko Strathmann :master * 7e8d80c / examples/undocumented/python_modular/graphical/statistics_linear_time_mmd.py: https://github.com/shogun-toolbox/shogun/commit/7e8d80c82ed31d265f8435273f3061a8a0100f1e17:58
shogun-notifier-shogun: minor fix17:58
shogun-notifier-shogun: Heiko Strathmann :master * ec2c6ef / examples/undocumented/python_modular/graphical/statistics_quadratic_time_mmd.py: https://github.com/shogun-toolbox/shogun/commit/ec2c6efb07210fb978e384467b4cbad18d3c588317:58
shogun-notifier-shogun: made example work again17:58
shogun-notifier-shogun: Heiko Strathmann :master * 0dc8b38 / / (3 files): https://github.com/shogun-toolbox/shogun/commit/0dc8b38f8fe0fa429dae0377885c11a26119935a17:58
shogun-notifier-shogun: Merge pull request #904 from karlnapf/master17:58
shogun-notifier-shogun:17:58
shogun-notifier-shogun: made graphical examples for MMD work again17:58
shogun-notifier-shogun: Heiko Strathmann :master * 17f5597 / examples/undocumented/python_modular/graphical/statistics_hsic.py: https://github.com/shogun-toolbox/shogun/commit/17f5597447cbf6d04296045a4b3b312b646bc9a918:03
shogun-notifier-shogun: made hsic graphical example work again18:03
shogun-notifier-shogun: Heiko Strathmann :master * 0dcf086 / examples/undocumented/python_modular/graphical/statistics_hsic.py: https://github.com/shogun-toolbox/shogun/commit/0dcf0866aeb8bac9474d9a15277fc92735c65fab18:03
shogun-notifier-shogun: Merge pull request #905 from karlnapf/master18:03
shogun-notifier-shogun:18:03
shogun-notifier-shogun: fixed hsic graphical example18:03
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shogun-buildbotbuild #593 of cyg1 - libshogun is complete: Failure [failed configure]  Build details are at http://www.shogun-toolbox.org/buildbot/builders/cyg1%20-%20libshogun/builds/593  blamelist: Heiko Strathmann <heiko.strathmann@gmail.com>18:31
shogun-buildbotbuild #862 of deb3 - modular_interfaces is complete: Failure [failed test python_modular]  Build details are at http://www.shogun-toolbox.org/buildbot/builders/deb3%20-%20modular_interfaces/builds/862  blamelist: Heiko Strathmann <heiko.strathmann@gmail.com>18:32
heikoblackburn:  around?18:40
heikoblackburn: how to use shogun from matlab?18:40
alexlovesdata@heiko:18:45
heikoalexlovesdata: hi18:45
alexlovesdatamatlab static creates a sg.mexglx or a sg.mexa6418:45
alexlovesdatayou copy it in some path18:45
heikoI see, so I have to do this manually?18:45
alexlovesdataand do in matlab sgpath= 'that path'18:46
alexlovesdataaddpath(sgpath)18:46
heikocool I will try that, thx18:46
alexlovesdatayou need to tell matlab where sg.mexa64 is18:46
alexlovesdatathen you cna use static interfaces which are a bit outdated18:46
heikoalexlovesdata: so new shogun classes are not automatically available for these right?18:46
alexlovesdataHeiko? : suggestion for interface of unittest ... I am a stupid mathematician with thick glasses18:47
heikoalexlovesdata: yes, we have this new framework for it. Its yet a bit hacky but works18:47
alexlovesdataye, new shogun classes are not per default available unless the interfaces are coded as commands18:47
heikosee the tests folder18:47
heikotests/unit/ ...18:48
alexlovesdataone could imagine to auto-create interfaces in static interfaces18:48
alexlovesdata@heiko: thx ... will look into that today later18:48
heikoyou create a file with a similar naming as the existing ones18:48
heikoand then need to import the gtest and gmock header18:48
heikobut this is all in the existing tests18:48
heikoyou need to manually download gtest and gmock and provide their path to configure18:48
alexlovesdatai will check that when I have time :)18:54
shogun-buildbotbuild #863 of deb3 - modular_interfaces is complete: Failure [failed test python_modular]  Build details are at http://www.shogun-toolbox.org/buildbot/builders/deb3%20-%20modular_interfaces/builds/863  blamelist: Heiko Strathmann <heiko.strathmann@gmail.com>19:00
heikoblackburn: the above error is tapkee19:00
alexlovesdatahi heiko. I read your email, the solution is simple19:01
heikoalexlovesdata: cool :) what is it?19:01
alexlovesdatayou need to compile with an older C++ version which is compatible with the C++ version used to cmopile matlab libraries19:01
heikouargh19:02
heikothat is ugly19:02
alexlovesdata-cc=gcc-4.x -cxx=g++-4.x19:02
alexlovesdatabut it solves the issue19:02
heikobut ok, thanks for the hint19:02
alexlovesdatamatlab ships its own version of libraries including some boost libraries19:03
alexlovesdataand these get used when you run matlab19:03
heikoI see19:03
heikobtw have you ever written a matlab interface? I wonder how much work that would be19:03
heikosince I want to make my stuff available from matlab19:04
alexlovesdatait is not so much work19:04
alexlovesdatamaybe 15 minutes per command19:04
heikoIs a lot of thinking involved? :)19:04
alexlovesdataI know what I have to do when I look into it ...19:04
alexlovesdatano ... for an IT guy it is a low-brainer19:04
heikook, Ill look into some examples19:05
alexlovesdatabasically you have to define the command syntax ... and then 2 interfaces19:05
heikocool, thanks a lot19:06
alexlovesdatasrc/shogun/ui/GUICommands.h19:08
alexlovesdatasrc/shogun/ui/SGInterface.h19:15
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blackburnheiko: whoo19:27
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shogun-notifier-shogun: Sergey Lisitsyn :master * 55855d4 / src/shogun/lib/tapkee/tapkee_shogun.cpp: https://github.com/shogun-toolbox/shogun/commit/55855d479e6fef46d5f5b06c51612877b39058f520:36
shogun-notifier-shogun: Added missed number of vectors setting for FA20:36
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shogun-buildbotbuild #311 of nightly_default is complete: Failure [failed test]  Build details are at http://www.shogun-toolbox.org/buildbot/builders/nightly_default/builds/31120:47
shogun-buildbotbuild #594 of cyg1 - libshogun is complete: Success [build successful]  Build details are at http://www.shogun-toolbox.org/buildbot/builders/cyg1%20-%20libshogun/builds/59421:00
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shogun-buildbotbuild #864 of deb3 - modular_interfaces is complete: Failure [failed test python_modular]  Build details are at http://www.shogun-toolbox.org/buildbot/builders/deb3%20-%20modular_interfaces/builds/864  blamelist: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>21:24
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@sonney2kalexlovesdata, did you see my messages about your fourier features?21:56
shogun-notifier-shogun: Sergey Lisitsyn :master * adb36ad / src/shogun/lib/tapkee/ (8 files): https://github.com/shogun-toolbox/shogun/commit/adb36ad022b558983f530802cd0832392f783c7e22:06
shogun-notifier-shogun: Updates for tapkee22:06
shogun-notifier-shogun:22:06
shogun-notifier-shogun: - MSVS compatibility22:06
shogun-notifier-shogun: - Better checkers22:06
shogun-buildbotbuild #865 of deb3 - modular_interfaces is complete: Failure [failed test python_modular]  Build details are at http://www.shogun-toolbox.org/buildbot/builders/deb3%20-%20modular_interfaces/builds/865  blamelist: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>22:54
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alexlovesdatasonney2: no I did not see :(23:17
alexlovesdatain the chat? at what time+ day?23:17
-!- alexlovesdata [~binder@fokus8239.fokus.fraunhofer.de] has left #shogun []23:19
--- Log closed Tue Mar 05 00:00:59 2013