Open in new window / Try shogun cloud
--- Log opened Mon Nov 18 00:00:29 2013
shogun-buildbot_build #621 of nightly_default is complete: Failure [failed notebooks]  Build details are at http://buildbot.shogun-toolbox.org/builders/nightly_default/builds/62104:17
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@sonney2klisitsyn, you brutalo!09:22
@lisitsynsonney2k: haha09:28
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taylanGood morning again..09:47
taylanI had an insufficient memory error a couple of days ago, and I tried to reproduce this with libshogun as well..09:48
taylanThe grid search tries to allocate 16 GB of memory, which fails of course..09:48
taylanReproduceing is quite easy, you just need to increase the num_vectors to 20000 and dim_vectors to 7 in  examples/undocumented/libshogun/modelselection_grid_search_kernel.cpp09:49
shogun-buildbot_build #285 of osx1 - libshogun is complete: Failure [failed compile shell]  Build details are at http://buildbot.shogun-toolbox.org/builders/osx1%20-%20libshogun/builds/285  blamelist: Soeren Sonnenburg <sonne@debian.org>09:51
taylanDoes anybody have any pointers for me?09:51
@lisitsyntaylan: hey10:08
@lisitsyntaylan: I can take a look but not earlier than tomorrow10:08
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taylanNo problem, I think we are allocating a memory for a matrix of size 20Kx20K..10:13
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taylanwhich is called from CustomKernel.h10:14
taylanset_full_kernel_matrix_from_full10:14
@lisitsyntaylan: oh that's quite possible10:14
taylanwell, so we can't in theory handle this, since 20Kx20Kx8 = 3.2 GB10:17
taylanIs there any plan to introduce memory mapped files maybe?10:17
taylanI am not sure if this will resolve the issue though..10:17
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@sonney2klisitsyn, we shouldn't be using a custom kernel in the first place for that10:47
@sonney2kbesser82, any cmake news?10:47
besser82sonney2k: not yet will open a PR when ready  ;)10:48
@sonney2ktaylan, just use     cross->set_autolock(false); then it will work10:53
@lisitsynahhh autolock10:53
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taylansonney2k, thanks for the hint..11:00
taylancan you explain what this does, just to kill my ignorance abit..11:01
@sonney2ktaylan, not precompute the kernel matrix11:02
@sonney2kso things will fit in memory11:02
taylanthanks a lot..and we do precompute for performance reasons?11:03
@sonney2ktaylan, yes11:04
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shogun-notifier-shogun: Viktor Gal :develop * 75fff36 / src/shogun/CMakeLists.txt,src/shogun/multiclass/ScatterSVM.cpp: https://github.com/shogun-toolbox/shogun/commit/75fff36da3b792a9094fa705b80cbc3f86d7b6ac11:33
shogun-notifier-shogun: Add option to build static libshogun11:33
shogun-buildbot_build #2468 of deb1 - libshogun is complete: Failure [failed compile test]  Build details are at http://buildbot.shogun-toolbox.org/builders/deb1%20-%20libshogun/builds/2468  blamelist: Viktor Gal <viktor.gal@maeth.com>11:43
shogun-notifier-shogun: Viktor Gal :develop * 8ad6baa / CMakeLists.txt,src/shogun/io/protobuf/CMakeLists.txt: https://github.com/shogun-toolbox/shogun/commit/8ad6baabbb6ec470a264b18105d510f22da1d5e012:00
shogun-notifier-shogun: Properly set -fPIC compiler flag if required12:00
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@wikingsonney2k: there u go a libshogun.a with proper fPIC detection12:11
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shogun-buildbot_build #2469 of deb1 - libshogun is complete: Success [build successful]  Build details are at http://buildbot.shogun-toolbox.org/builders/deb1%20-%20libshogun/builds/246912:15
shogun-buildbot_build #1953 of bsd1 - libshogun is complete: Failure [failed compile test]  Build details are at http://buildbot.shogun-toolbox.org/builders/bsd1%20-%20libshogun/builds/1953  blamelist: Viktor Gal <viktor.gal@maeth.com>12:17
shogun-notifier-shogun: Viktor Gal :develop * 3607f94 / src/shogun/CMakeLists.txt: https://github.com/shogun-toolbox/shogun/commit/3607f9467147525a76bbabba17b35006d465fb4612:20
shogun-notifier-shogun: The libshogun object set should depend on the bundled libraries12:20
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shogun-buildbot_build #290 of precise - libshogun is complete: Failure [failed configure]  Build details are at http://buildbot.shogun-toolbox.org/builders/precise%20-%20libshogun/builds/290  blamelist: Viktor Gal <viktor.gal@maeth.com>12:22
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travis-ci[travis-ci] it's Viktor Gal's turn to pay the next round of drinks for the massacre he caused in shogun-toolbox/shogun: http://travis-ci.org/shogun-toolbox/shogun/builds/1413301212:29
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shogun-buildbot_build #329 of FC19 - libshogun is complete: Success [build successful]  Build details are at http://buildbot.shogun-toolbox.org/builders/FC19%20-%20libshogun/builds/32912:43
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travis-ci[travis-ci] it's Viktor Gal's turn to pay the next round of drinks for the massacre he caused in shogun-toolbox/shogun: http://travis-ci.org/shogun-toolbox/shogun/builds/1413407812:57
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travis-ci[travis-ci] it's Viktor Gal's turn to pay the next round of drinks for the massacre he caused in shogun-toolbox/shogun: http://travis-ci.org/shogun-toolbox/shogun/builds/1413478513:20
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shogun-buildbot_build #116 of clang34 - undefined behaviour analysis is complete: Failure [failed test]  Build details are at http://buildbot.shogun-toolbox.org/builders/clang34%20-%20undefined%20behaviour%20analysis/builds/116  blamelist: Viktor Gal <viktor.gal@maeth.com>13:23
shogun-buildbot_build #1954 of bsd1 - libshogun is complete: Failure [failed compile test]  Build details are at http://buildbot.shogun-toolbox.org/builders/bsd1%20-%20libshogun/builds/1954  blamelist: Viktor Gal <viktor.gal@maeth.com>13:24
shogun-buildbot_build #291 of precise - libshogun is complete: Failure [failed configure]  Build details are at http://buildbot.shogun-toolbox.org/builders/precise%20-%20libshogun/builds/291  blamelist: Viktor Gal <viktor.gal@maeth.com>13:30
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shogun-buildbot_build #114 of clang34 - thread analysis is complete: Failure [failed test]  Build details are at http://buildbot.shogun-toolbox.org/builders/clang34%20-%20thread%20analysis/builds/114  blamelist: Viktor Gal <viktor.gal@maeth.com>13:45
@sonney2kwiking, nice I can use that for the .deb14:04
shogun-buildbot_build #133 of clang34 - static analysis is complete: Failure [failed analyse]  Build details are at http://buildbot.shogun-toolbox.org/builders/clang34%20-%20static%20analysis/builds/133  blamelist: Viktor Gal <viktor.gal@maeth.com>14:28
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@sonney2kwiking, if you have more cmake time any ideas help wrt building the package w/o the shogun dir available would be much appreciated14:46
shogun-buildbot_build #117 of clang34 - undefined behaviour analysis is complete: Failure [failed test]  Build details are at http://buildbot.shogun-toolbox.org/builders/clang34%20-%20undefined%20behaviour%20analysis/builds/117  blamelist: Viktor Gal <viktor.gal@maeth.com>15:06
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shogun-buildbot_build #115 of clang34 - thread analysis is complete: Failure [failed test]  Build details are at http://buildbot.shogun-toolbox.org/builders/clang34%20-%20thread%20analysis/builds/115  blamelist: Viktor Gal <viktor.gal@maeth.com>15:21
@sonney2kbesser82, any news? or should I try my way(tm) ?15:44
shogun-buildbot_build #134 of clang34 - static analysis is complete: Failure [failed analyse]  Build details are at http://buildbot.shogun-toolbox.org/builders/clang34%20-%20static%20analysis/builds/134  blamelist: Viktor Gal <viktor.gal@maeth.com>16:04
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shogun-buildbot_build #286 of osx1 - libshogun is complete: Success [build successful]  Build details are at http://buildbot.shogun-toolbox.org/builders/osx1%20-%20libshogun/builds/28616:50
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@wikingsonney2k: what do u mean w/o shogun dir available?19:22
@wikingsonney2k: u mean libshogun src and only the .h files?19:22
@sonney2kwiking, yes no src/shogun available but only the installed headers19:35
@sonney2kwiking, I looked at the fPIC detection ... there must be a smarter way but I couldn't find it19:36
@wikingsonney2k: well this one is better than the previous hardcoded one ;)19:36
@wikingbut go ahead with a better patch19:36
@wikingsonney2k: the problem is that from now on we have to depend to have cmake 2.8.8+19:37
@sonney2kwiking, no problem with that19:38
@sonney2kwiking, I was searching the web already19:38
@sonney2kdidn't find any better solution for fPIC19:38
@wikingi've just upgraded cmake in precise so that it runs good as well on that bot ...19:39
@sonney2kwiking, but I can tell that this won't help for this here https://buildd.debian.org/status/package.php?p=shogun19:39
@sonney2kI guess powerpc is also fPIC but no idea about e.g. s390 or sparc or mips19:40
@wikingsonney2k: ain't got no access for those archs ;)19:40
@wikingso have no idea19:40
@wikingshogun-buildbot_: force build --branch=develop 'precise - libshogun'19:41
shogun-buildbot_build forced [ETA 27m35s]19:41
shogun-buildbot_I'll give a shout when the build finishes19:41
@sonney2kwiking, well shogun will be built on them so we will see...19:42
@wiking/<<PKGBUILDDIR>>/src/shogun/io/SerializableAsciiReader00.cpp:96:35: error: lvalue required as left operand of assignment19:43
@wikingwtf is this :)19:43
@sonney2kwiking, I fixed this already in git dev19:43
@wikingah ok19:43
@wikinghttp://www.khronos.org/openvx19:47
@wikingnize19:47
@wikingmmm i'm just importing a 1.9 billion tripplets based rdf dataset19:47
@wikingit's just saaaaaaad how bad the hw is ;19:47
@wiking:)19:47
shogun-buildbot_build #292 of precise - libshogun is complete: Success [build successful]  Build details are at http://buildbot.shogun-toolbox.org/builders/precise%20-%20libshogun/builds/29219:57
@wikingok cool precise is back to being green19:58
@wikinglet'ssee travis19:58
@wikingohfuck19:58
@wiking:>19:58
@wikingneed to upgrade cmake on travis19:59
@wiking:)19:59
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@wikinglisitsyn1: seen this one: http://www.khronos.org/openvx21:20
lisitsyn1wiking: yeah seen that in news21:20
lisitsyn1wiking: have you glanced over it?21:20
@wikingyep21:20
lisitsyn1I planned to do later21:21
@wikingit's really basic building blocks21:21
lisitsyn1anything interesting?21:21
@wikinglike openmax21:21
@wikingwell it's gonna be nice21:21
@wikingwhen there are such fpgas or cpu parts21:21
@wikingso that u can call those via this api21:21
@wikingand have it in one instruction21:21
@wiking;P21:21
@wikingother than that... i think we should start working on moving things into separate dlls21:24
@wikingand have something like a pipeline21:24
@wikinggstreamer et. al. style21:24
lisitsyn1wiking: yeash!21:24
@wikinglet's sketch up21:26
@wikingthere are input readers21:27
@wikingwhich transform the input into some Feature type21:27
@wikingon which we can apply preprocessors21:27
@wikingand then those can be piped into some machine21:28
@wikingi think i should catch Ed to pin-point us some things to avoid when we would do this21:28
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shogun-notifier-shogun: Roman Votyakov :develop * 70d705a / / (2 files): https://github.com/shogun-toolbox/shogun/commit/70d705aadaeadefd6cbac2dfe1aca830e696baa321:31
shogun-notifier-shogun: fix fail in FITC when number of latent features is not equal to number of training features21:31
shogun-notifier-shogun: Soeren Sonnenburg :develop * 8313595 / / (2 files): https://github.com/shogun-toolbox/shogun/commit/8313595d37bef59098be9d716a97c431977ebae221:31
shogun-notifier-shogun: Merge pull request #1757 from votjakovr/feature/gp_refactoring21:31
shogun-notifier-shogun:21:31
shogun-notifier-shogun: Fix fail in FITC when number of latent features is not equal to number of training features21:31
@wikingyey now somebody fix travis build :)21:31
lisitsyn1wiking: I'd like to talk that out a bit later tihs week ;)21:32
@wikinghehehe well fill out doodle21:32
@wikinglisitsyn1: http://www.doodle.com/kiz83rkgg3dyzech21:33
lisitsyn1yes21:33
lisitsyn1wiking: that's me robotron mega blaster 300021:36
@wikingyey21:36
lisitsyn1and don't say I have self identity crysis I know21:36
@wikingyeah actually stuff like this would be amaazing21:39
@wiking/opt/local/lib/gstreamer-1.0/libgsttheora.so21:39
@wikingmeaning we wouldn't create a big fuckiing bundle21:39
@wikingbut each component would be a dynloadable stuff21:40
@wikingi wonder how swig would actually handle this part :S21:40
lisitsyn1wiking: absolutely no idea about that but I am quite pessimistic21:42
lisitsyn1swig is quite troublesome sometimes you know21:43
lisitsyn1there is nothing else though21:44
@wikinglisitsyn1: well apart from swig21:44
@wikingactually we are quite prepared to do this21:44
@wikingbecause we have like kazzillion abstract classes21:44
lisitsyn1wiking: yeah21:44
lisitsyn1we should convert to something like d-ptrs everywhere21:44
shogun-buildbot_build #1955 of bsd1 - libshogun is complete: Failure [failed compile test]  Build details are at http://buildbot.shogun-toolbox.org/builders/bsd1%20-%20libshogun/builds/1955  blamelist: Roman Votyakov <votjakovr@gmail.com>21:44
@wikinghehehe21:44
@wikinggood luck have fun :)21:45
lisitsyn1wiking: haha well that's how it should be done21:45
@wikingyeah true21:45
@wikingdpointers + gstreamer dynload pipelining21:45
@wikingand then we are happy i guess21:46
@wikingbut then again sonney2k is doing a better approach21:46
@wikingby making a deb package21:46
@wikingtrust me that's like 100% more needed than a fucking usuable sw21:47
@wiking:D21:47
@wikingbut when we do gsoc next year21:47
@wikingwe should have 2 slots that actually does some sw architecturing on shogun21:47
@wikinginstead of adding a new component21:47
shogun-buildbot_build #1956 of bsd1 - libshogun is complete: Failure [failed compile test]  Build details are at http://buildbot.shogun-toolbox.org/builders/bsd1%20-%20libshogun/builds/1956  blamelist: Soeren Sonnenburg <sonne@debian.org>21:48
lisitsyn1wiking: heh students doing sw architectures?21:51
@wikingwell supoprting21:51
@wikingso that let's say we want dpointers21:51
@wikingit's not that high IQ stuff to do21:51
@wikingbut it cannot really be done by only scripting21:52
lisitsyn1wiking: ah well that's easy job yes21:52
@wikingso i think a student could do that easily21:53
@wikingsince it's just a lot of fucking stupid work21:53
@wikingactualy21:53
@wiking21:51:36,679 [Thread-4] INFO  jenatdb.RdfResourceImporter - Add: 82,450,000 triples (Batch: 46,339 / Avg: 20,118)21:54
@wikingoooh yeah21:54
@wikingand i have 1.9E9 triplets21:54
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@wikingi'm looong way from kanzas :)21:55
@wikingkansas toto21:55
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travis-ci[travis-ci] it's Soeren Sonnenburg's turn to pay the next round of drinks for the massacre he caused in shogun-toolbox/shogun: http://travis-ci.org/shogun-toolbox/shogun/builds/1416013822:00
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@sonney2kwiking, is cmake failing on travis due to the cmake .8 requirement?22:01
@wikingyepey22:01
@wikingsonney2k: there's a backport in this repo22:01
@wikingsudo add-apt-repository ppa:kubuntu-ppa/backports22:01
@wikingthis has 2.8.9 cmake22:02
@wikingso that should be added to .travis.yml in a smart way22:02
@sonney2kwiking, ok I see.22:04
@sonney2kwiking, I thought about what you said above22:04
@sonney2kwiking, if I know how to split up shogun I would love to22:04
@sonney2kwiking, problem is indeed swig - we cannot split that up at all22:04
@sonney2kwiking, we must in the end have just 1 modshogun for swig interfaces22:05
@sonney2knevertheless considering the autotools rule, 1 dir == 1 module is imho the way to go22:05
@sonney2k*but*22:06
@sonney2kwe should have d-ptrs first - otherwise the swig module is a nightmare22:06
@sonney2kwiking, lisitsyn1 is the doodle utc?22:07
@sonney2kand my time availability is a bit *not sure*22:07
@sonney2kfor any date :/22:07
shogun-notifier-shogun: Soeren Sonnenburg :develop * 511f61e / .travis.yml: https://github.com/shogun-toolbox/shogun/commit/511f61eb881fc2f56611dc0a1e9f3283fc6555ab22:12
shogun-notifier-shogun: add ppa for travis and cmake 2.8.922:12
@wikingsonney2k: mm m i've set cet22:23
@wikingbut then again it switched to utc22:23
@wiking:D22:23
@wikingso go figue22:23
@wikingfigure22:23
lisitsyn1go figure timezone22:24
@sonney2kwiking, so we are +-12 hrs of?22:30
@wikingeh?22:32
@wiking+-122:33
shogun-buildbot_build #118 of clang34 - undefined behaviour analysis is complete: Failure [failed test]  Build details are at http://buildbot.shogun-toolbox.org/builders/clang34%20-%20undefined%20behaviour%20analysis/builds/118  blamelist: Roman Votyakov <votjakovr@gmail.com>22:43
@sonney2kwiking, ah btw swig supports modules but I had crashes back then in some of the interfaces (it did work in python though but wrapped code size in total was bigger like 2 times)22:49
@wiking:S22:49
@sonney2kwiking, as in we really had a shogun.Kernel module22:50
@sonney2k(that is why the examples are still like this)22:50
@sonney2kand a shogun.Features module22:50
@sonney2kbut since Kernels need to be aware of features you had to make everything known in there22:50
@sonney2kthat is very difficult to do right22:50
@wikingok build back to green22:54
@wikingyey22:55
shogun-buildbot_build #116 of clang34 - thread analysis is complete: Failure [failed test]  Build details are at http://buildbot.shogun-toolbox.org/builders/clang34%20-%20thread%20analysis/builds/116  blamelist: Roman Votyakov <votjakovr@gmail.com>22:58
shogun-buildbot_build #1957 of bsd1 - libshogun is complete: Failure [failed compile test]  Build details are at http://buildbot.shogun-toolbox.org/builders/bsd1%20-%20libshogun/builds/1957  blamelist: Soeren Sonnenburg <sonne@debian.org>23:04
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travis-ci[travis-ci] it's Soeren Sonnenburg's turn to pay the next round of drinks for the massacre he caused in shogun-toolbox/shogun: http://travis-ci.org/shogun-toolbox/shogun/builds/1416222323:10
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shogun-buildbot_build #328 of FCRH - libshogun is complete: Failure [failed test]  Build details are at http://buildbot.shogun-toolbox.org/builders/FCRH%20-%20libshogun/builds/328  blamelist: Soeren Sonnenburg <sonne@debian.org>23:13
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lisitsyn1sonney2k: know ben taskar?23:32
lisitsyn1it seems just died from heart attack23:34
shogun-buildbot_build #135 of clang34 - static analysis is complete: Failure [failed analyse]  Build details are at http://buildbot.shogun-toolbox.org/builders/clang34%20-%20static%20analysis/builds/135  blamelist: Roman Votyakov <votjakovr@gmail.com>23:44
shogun-buildbot_build #119 of clang34 - undefined behaviour analysis is complete: Failure [failed test]  Build details are at http://buildbot.shogun-toolbox.org/builders/clang34%20-%20undefined%20behaviour%20analysis/builds/119  blamelist: Soeren Sonnenburg <sonne@debian.org>23:57
--- Log closed Tue Nov 19 00:00:31 2013