Open in new window / Try shogun cloud
--- Log opened Thu Dec 12 00:00:03 2013
-!- thoralf [] has joined #shogun00:01
-!- FSCV [~FSCV@] has quit [Quit: Leaving]00:56
-!- iglesiasg [] has quit [Quit: Leaving]01:03
-!- new_lido [~walid@] has joined #shogun01:37
-!- new_lido [~walid@] has quit [Ping timeout: 260 seconds]01:51
-!- HeikoS [] has joined #shogun01:52
-!- mode/#shogun [+o HeikoS] by ChanServ01:52
-!- new_lido [~walid@] has joined #shogun02:03
-!- HeikoS [] has quit [Quit: Leaving.]02:25
-!- new_lido [~walid@] has quit [Ping timeout: 250 seconds]02:29
-!- new_lido [~walid@] has joined #shogun02:45
-!- new_lido [~walid@] has quit [Ping timeout: 240 seconds]02:52
-!- new_lido [~walid@] has joined #shogun03:05
-!- new_lido [~walid@] has quit [Ping timeout: 246 seconds]03:12
shogun-buildbotbuild #645 of nightly_default is complete: Failure [failed notebooks]  Build details are at
-!- benibadman [~benibadma@] has joined #shogun08:40
-!- thoralf [] has quit [Quit: Konversation terminated!]08:51
-!- besser82 [~besser82@2a02:8108:8840:1800:e8b:fdff:fe16:bb33] has joined #shogun09:14
-!- besser82 [~besser82@2a02:8108:8840:1800:e8b:fdff:fe16:bb33] has quit [Changing host]09:14
-!- besser82 [~besser82@fedora/besser82] has joined #shogun09:14
-!- iglesiasg [] has joined #shogun09:40
-!- mode/#shogun [+o iglesiasg] by ChanServ09:40
-!- zxtx [] has quit [Ping timeout: 250 seconds]10:14
-!- zxtx [] has joined #shogun10:55
-!- zxtx [] has quit [Ping timeout: 246 seconds]11:15
-!- zxtx [] has joined #shogun11:31
-!- zxtx [] has quit [Ping timeout: 240 seconds]11:52
-!- zxtx [] has joined #shogun12:08
-!- iglesiasg [] has quit [Quit: Leaving]12:10
-!- benibadm_ [~benibadma@] has joined #shogun15:05
-!- benibadman [~benibadma@] has quit [Ping timeout: 252 seconds]15:07
-!- iglesiasg [~iglesiasg@] has joined #shogun15:13
-!- mode/#shogun [+o iglesiasg] by ChanServ15:13
-!- adrin [] has quit [Ping timeout: 260 seconds]15:16
-!- adrin [] has joined #shogun15:17
@iglesiasgHi besser8215:18
besser82iglesiasg: Hi Fernando!15:19
@iglesiasgbesser82, Did you see travis complains about some wrong compilation option?15:19
besser82iglesiasg: Not yet...  where?15:19
@iglesiasgAlthough I don't know yet why it is happening15:21
besser82iglesiasg: just because that checkout doesn't have c++11-detection in it  ;)15:22
besser82iglesiasg: nothing problematic  ;)15:22
@iglesiasgbesser82, what does it mean that the checkout doesn't have the c++11 detection?15:23
besser82iglesiasg: cmake actually doesn't check if the compiler is aware of `std=c++11`15:23
besser82iglesiasg: it currently just injects that flag...15:23
@iglesiasgaham I understand15:24
besser82iglesiasg: and gcc 4.6 - afaik - has no std=c++11, but std=c++0x15:24
@iglesiasgbesser82, yes, I think so too15:24
besser82iglesiasg: which in fact now is deprecated and became c++1115:25
besser82iglesiasg: i just need to add that check  ;)15:25
@iglesiasgdamn ubuntu LTS :D15:25
@iglesiasgbesser82, that sounds good15:26
@iglesiasglet us try to get Travis back to life15:26
@iglesiasgthis one is probably the tiniest of the problems it currently has though15:26
besser82iglesiasg: that's just my feature branch  ;)15:26
@iglesiasgbesser82, aaah true!15:26
@iglesiasgI am such an idiot, didn't realize of that lol15:26
besser82iglesiasg: np  ;)15:26
-!- Saurabh7 [~Saurabh7@] has joined #shogun15:44
-!- benibadman [~benibadma@] has joined #shogun15:45
-!- benibadm_ [~benibadma@] has quit [Ping timeout: 246 seconds]15:47
-!- shogun-notifier- [] has joined #shogun16:08
shogun-notifier-shogun: Fernando Iglesias :develop * 03f612d / doc/pages/Installation.mainpage:
shogun-notifier-shogun: Tiny fix for typo in Doxygen16:08
-!- bb [458fc8de@gateway/web/freenode/ip.] has joined #shogun16:10
Saurabh7hello,i was looking to contribute to shogun as i am curious abt machine learning16:15
Saurabh7, is there sort of any beginner task out there?  or any suggestion?16:16
bbwas trying to install shogun on ubuntu and get the following error message after sudo make command16:17
bb[ 84%] copying SWIG files [ 84%] Built target python_modular_src [ 84%] Built target python_doxy2swig [ 84%] Built target _python_modular Linking CXX executable balanced_conditional_probability_tree ../../../src/shogun/ undefined reference to `H5T_NATIVE_INT16_g' ../../../src/shogun/ undefined reference to `H5Sselect_elements' ../../../src/shogun/ undefined reference to `H5Dread' ../.16:17
bbcollect2: ld returned 1 exit status make[2]: *** [examples/undocumented/libshogun/balanced_conditional_probability_tree] Error 1 make[1]: *** [examples/undocumented/libshogun/CMakeFiles/balanced_conditional_probability_tree.dir/all] Error 2 make: *** [all] Error 216:18
shogun-buildbotbuild #2015 of bsd1 - libshogun is complete: Success [build successful]  Build details are at
@iglesiasgSaurabh7, there should be some initiation tasks in the issues in GitHub16:27
@iglesiasgbb, what did you do before that?16:29
@iglesiasgbb, why compiling with make btw?16:29
@iglesiasgbb, oops sorry, compiling with sudo, i.e. sudo make16:30
besser82iglesiasg: the problem seems to be about the ldflags....16:30
@iglesiasgbesser82, do you know if thos H5 are related to HDF5??16:31
besser82iglesiasg: Yes, had the same probs on recent FC20  ;)16:31
@iglesiasgwell maybe try then deactivating HDF5 if you are not going to use it bb :)16:32
besser82iglesiasg: you can usually trust me, when it comes to compiler-stuff  ;)16:32
besser82iglesiasg: he already pinged me in a 1:1 and I told him to adjust his LDFLAGS  ;)16:33
besser82iglesiasg: like export LDFLAGS="-lhdf5"16:33
@iglesiasgaaah all right then16:33
@iglesiasggood good16:33
Saurabh7iglesiasg, yes i had a look but couldnt pick one16:34
bbiglesiasg thanks besser82 is helping me16:35
@iglesiasgSaurabh7, You are welcome to do all then ;)16:35
besser82iglesiasg, Saurabh7: only peole with push-access can assign issues to them  ;)16:36
Saurabh7iglesiasg, oh i meant pick one to go ahead with properly16:36
Saurabh7for example in
Saurabh7i couldnt find the said semi tests16:36
@iglesiasgI guess the idea is to do unit tests for cross validation out of the libshogun examples16:37
@iglesiasgSaurabh7, have a look in examples/undocumented/libshogun/* for them16:38
@iglesiasgSaurabh7, I see a few splitting_*_cross_validation.cpp16:38
shogun-buildbotbuild #352 of precise - libshogun is complete: Success [build successful]  Build details are at
bbcan shogun be compiled natively on mac osx.  I tried that and did not make any progress..16:42
Saurabh7iglesiasg, thanks i ll have a look16:43
bbbesser82, still give me the same error16:47
bbcollect2: ld returned 1 exit status make[2]: *** [examples/undocumented/libshogun/balanced_conditional_probability_tree] Error 1 make[1]: *** [examples/undocumented/libshogun/CMakeFiles/balanced_conditional_probability_tree.dir/all] Error 2 make: *** [all] Error 216:47
besser82bb: where is your located?!?16:47
@iglesiasgbb, it should be indeed possible. At least one core developer is using os x16:48
shogun-buildbotbuild #2092 of deb3 - modular_interfaces is complete: Failure [failed test csharp modular]  Build details are at  blamelist: Fernando Iglesias <>16:49
bbiglesiasg let me be able to compile it on ubuntu then i will try on osx16:49
bbbesser82 how do you check that16:50
besser82bb: sudo find / -name '*'16:51
besser82bb: please stand by...  i'm currently in a phone call for ~ 1h  will help you after....16:52
bbbesser82 /usr/lib/ /usr/lib/ /usr/lib/libhdf5.so16:53
@iglesiasgbb, are you planning to use that part of Shogun? I mean HDF516:53
bbbesser82 thanks will wait16:53
@iglesiasgbb, if not, then it can be easier just to tell cmake not to use HDF5 stuff16:54
-!- iglesiasg [~iglesiasg@] has quit [Quit: Leaving]16:55
-!- Saurabh7 [~Saurabh7@] has quit [Ping timeout: 272 seconds]16:56
bbiglesiasg yes that would be nice to have in the near future16:56
@wikingbb: it can.. i can17:00
-!- travis-ci [] has joined #shogun17:03
travis-ci[travis-ci] it's Fernando Iglesias's turn to pay the next round of drinks for the massacre he caused in shogun-toolbox/shogun:
-!- travis-ci [] has left #shogun []17:03
bbwiking i get this error on mac osx17:04
bbIn file included from /Users/beenishb/Documents/shogun/src/shogun/base/init.cpp:12: In file included from /opt/local/include/shogun/mathematics/Math.h:21: In file included from /opt/local/include/shogun/base/SGObject.h:18: In file included from /opt/local/include/shogun/lib/SGStringList.h:18: /opt/local/include/shogun/lib/SGReferencedData.h:25:2: error: unknown type name       'pthread_spinlock_t'; did you mean 'pthread_rwlock_t'?       17:04
bbwiking 3 errors generated. make[2]: *** [src/shogun/CMakeFiles/libshogun.dir/base/init.cpp.o] Error 1 make[1]: *** [src/shogun/CMakeFiles/libshogun.dir/all] Error 2 make: *** [all] Error 217:08
-!- benibadman [~benibadma@] has quit []17:17
@wikinglisitsyn: fuck man have u seen this:
bbbesser82, are you back18:55
@wikingbb: aaah that's weird18:56
@wikingbb: can u copy-paste me your cmake output18:57
bbwiking here you go19:07
-!- shogun-notifier- [] has quit [Quit: transmission timeout]19:08
bbBeenishs-MacBook-Pro:build beenishb$ sudo cmake -DPythonModular=ON .. -- The C compiler identification is Clang 5.0.0 -- The CXX compiler identification is Clang 5.0.0 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- wo19:09
bbwiking i would have to copy past multiple times19:09
bbwiking as the irc will not let it copy fully19:10
@wikingbb: pastebin19:11
bbwiking i am not aware of it is it a command in irc19:13
bb-- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Could NOT find CCache (missing:  CCACHE)  -- Found SWIG: /opt/local/bin/swig (found suitable version "2.0.9", minimum required is "2.0.4")  -- Looking for C++ include unordered_map -- Looking for C++ include unordered_map - not found -- Using system's malloc -- Looking for isfinite -- Looking for isfinite - not found -- Looking for isinf -- Looking for isinf 19:15
bbwiking here you go
bbwiking can you see the cmake results..19:21
-!- lisitsyn [~lisitsyn@] has quit [Quit: Leaving.]19:58
@wikingbb: which version?20:08
-!- lisitsyn [~lisitsyn@] has joined #shogun20:10
bbwiking this is osx 10.920:26
bbwiking do you need any other file20:28
@wikingbb: and i guess u downloaded 3.0.0 release, right?20:48
bbwiking yes it is 3.0.0 when you say it works natively do you mean with or without macports20:53
-!- FSCV [] has joined #shogun21:30
-!- sonne|osx [~sonne@] has joined #shogun22:32
sonne|osxevening gents!22:34
-!- sonne|osx [~sonne@] has quit [Quit: sonne|osx]22:51
-!- iglesiasg [] has joined #shogun23:05
-!- mode/#shogun [+o iglesiasg] by ChanServ23:05
@sonney2kiglesiasg, how is it going?23:20
@iglesiasgsonney2k, hey!23:23
@iglesiasgsonney2k, good, good23:23
@iglesiasgI was in a talk by Stallman this afternoon23:23
@sonney2kiglesiasg, heh - what did he say?23:33
@iglesiasgsonney2k, plenty of stuff about freedom and against what he calls privative software23:34
@iglesiasgsonney2k, I am chasing the C# error in Travis23:34
@iglesiasgtrying to execute right now C# examples23:34
@iglesiasgUnhandled Exception: System.IO.FileNotFoundException: Could not load file or assembly 'modshogun, Version=, Culture=neutral, PublicKeyToken=null' or one of its dependencies.23:35
@iglesiasgsonney2k, do you know how do I point to the right location to get rid of the error ^?23:35
@sonney2kiglesiasg, yes just use the same thing we have in our script23:42
@iglesiasgsonney2k, ok, let me see23:42
@sonney2kiglesiasg, btw I could run and examples did work for me ...23:43
@iglesiasgsonney2k, really? C# ones?23:43
@sonney2kiglesiasg, yes it did work locally - I think it works when the examples are compiled with gmcs but not with dmcs23:44
@sonney2kiglesiasg, just try it...23:44
@iglesiasgsonney2k, yeah, I am fetching data atm23:45
@iglesiasgsonney2k, both buildbot and travis complain about it23:45
@iglesiasgI should actually just do a sym link to my other data repo instead of fetching it again23:48
@iglesiasgI checkout a new repo and called it shogun-csharp to test out this thing..23:49
@sonney2kiglesiasg, yeah no need to re-checkout23:49
@sonney2kiglesiasg, I also want to see this fixed btw so keep me updated23:49
* sonney2k is too tired now cu tomorrow23:50
@iglesiasgsonney2k, ok23:50
@iglesiasggood night!23:50
--- Log closed Fri Dec 13 00:00:04 2013