Open in new window / Try shogun cloud
--- Log opened Sat May 02 00:00:07 2015
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@wikingbesser82: ping07:09
@wikingsorry yesterday i fell asleep07:09
@wikingi have an almost done patch07:09
@wikingquestion07:09
@wikingwhere do we define the swig releated macros?07:10
@wikingsee for example SWIG_TYPE_TABLE=shogun SHOGUN07:10
@wikingor USE_BOOL07:10
@wikingetc07:10
@wikingif we can solve this then i can push my patch07:11
@besser82USE_BOOL can be taken from config.h07:14
@wikingit's not there yet07:15
@besser82The other's can done in modshogun.i afaik07:15
@wiking:)07:15
@wikingbut USE_BOOL is only used in swig related stuff07:15
@wikingthis is only used in .i07:15
@wikingLIST(APPEND DEFINES USE_CHAR)07:15
@wikingLIST(APPEND DEFINES USE_BOOL)07:15
@wikingLIST(APPEND DEFINES USE_UINT8)07:15
@wikingLIST(APPEND DEFINES USE_UINT16)07:15
@wiking#LIST(APPEND DEFINES USE_UINT32)07:15
@wikingLIST(APPEND DEFINES USE_UINT64)07:16
@wiking#LIST(APPEND DEFINES USE_INT8)07:16
@wiking#LIST(APPEND DEFINES USE_INT16)07:16
@wikingLIST(APPEND DEFINES USE_INT32)07:16
@wikingLIST(APPEND DEFINES USE_INT64)07:16
@wikingLIST(APPEND DEFINES USE_FLOAT32)07:16
@wikingLIST(APPEND DEFINES USE_FLOAT64)07:16
@wikingLIST(APPEND DEFINES USE_COMPLEX128)07:16
@wiking#LIST(APPEND DEFINES USE_FLOATMAX)07:16
@besser82wiking, that shouldn't matter  ;)07:16
@besser82wiking, let's stuff all in config.h07:17
@besser82wiking, and "%include <shogun/lib/config.h>" that in modshogun.i  :D07:17
@wikingokeeey07:18
@wikingwill do it then now07:18
@wikingand push07:18
@wikinggimme 5 mins07:18
@besser82okie...  will check locally then...  =)07:19
@wikingbesser82: this is a problematic thing to put in config.h:07:31
@wiking#cmakedefine HAVE_PYTHON 107:31
@wiking#cmakedefine HAVE_OCTAVE 107:31
@wikingas they are only relevant if we compile modular stuff07:31
@wikingand if we want to decouple libshogun from modular interfaces07:32
@wikingit's going to be a problem07:32
@wikingas actually one needs to override config.h macros...07:32
@wikingso i would actually create a swig_config.h07:32
@wikingthat we generate for modular interfaces07:33
@besser82wiking, if it's just this macro(s), we can pass them on cli07:34
@wikingmmm07:34
@besser82as when building / generating the swiged cxx07:34
@wikingwell all those USE_<types> are the same07:34
@wikingas well as07:34
@wikingHAVE_JBLAS07:34
@besser82those can go to config.h07:35
@wikingnoup07:35
@wikingagain07:35
@besser82so we have one common config.h07:35
@wikingjblas is only relevant07:35
@besser82why?07:35
@wikingif u create the java_modular interface07:35
@besser82and otherwise won't do impact, right?07:37
@besser82since we pass it now to all file being build...07:37
@besser82so no conflicts, when def'ing this in config.h  :P07:38
@besser82wiking, 107:38
@besser82wiking, ^07:38
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@besser82same is for HAVE_{PYTHON,OCTAVE,...}07:39
@besser82they don't collide with each other07:39
@wikingyeah but it's useless to define in config.h07:39
@besser82just, if one wouldn't have the deps installed when building libshogun...  :(07:39
@besser82not really useless...07:40
@wikingwell look07:40
@wikingif we build libshogun07:40
@wikingwe'll get a config.h07:40
@besser82yes07:40
@wikingthat won't have HAVE_PYTHON + HAVE_JBLAS etc defined07:40
@wikingthen you want to separately build the python_modular and java_modular interface07:41
@wikingthen you check the dependent libshogun's config.h07:41
@wikingand you will have a problem...07:41
@wikingor you start overriding those variables07:41
@wikingbut then i dont see why would you define them there in the first plac07:41
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@besser82wiking, I see...  It's about build-time config...07:44
@besser82then you are fully right...07:44
@besser82and we should generate that into swig_config.h sth...07:44
@besser82but the USE_* defines can go to config.h ?07:45
@wikingthose are the same07:46
@wikingonly used for *_modular (swig) stuf07:46
@besser82then we can put them there as well...07:46
@besser82swig_config07:46
@wikingok07:51
@wikingso shall we have a src/interfaces/modular/swig_config.h.in07:59
@wiking?07:59
@besser82yes, that would be nice08:07
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@wikingbesser82: okeeey testing now python modular09:42
@wikingif it works i'll commit+psuh09:42
@besser82wiking, allrighty, will then build all interfaces in a row  ;)10:01
@wikinghehe10:01
@besser82wiking, and run testsuite...  rpmbuild is tha thing  ;)10:01
@wikingok10:03
@wikingonly one error :))10:03
@besser82which error?10:03
@wiking/Users/wiking/shogun/build/src/interfaces/python_modular/modshogunPYTHON_wrap.cxx:384556:48: error: allocating an object of abstract class type 'shogun::CLinearARDKernel'10:04
@wiking      result = (shogun::CLinearARDKernel *)new shogun::CLinearARDKernel();10:04
@wiking                                               ^10:04
@wiking/Users/wiking/shogun/src/shogun/kernel/LinearARDKernel.h:160:30: note: unimplemented pure virtual method 'get_parameter_gradient' in 'CLinearARDKernel'10:04
@wiking virtual SGMatrix<float64_t> get_parameter_gradient(const TParameter* param,10:04
@wiking                             ^10:04
@wiking/Users/wiking/shogun/src/shogun/kernel/LinearARDKernel.h:197:20: note: unimplemented pure virtual method 'compute' in 'CLinearARDKernel'10:04
@wiking virtual float64_t compute(int32_t idx_a, int32_t idx_b)=0;10:04
@wikingdunno why10:04
@besser82push and I'll figure out =)10:07
@besser82as soon as we're finished, we can rebase the branch && PR... ;)10:09
@besser82wiking, ^10:10
@wikingmmm ok pushing10:11
@wikingcouldn't compile the python modular though10:11
@wikingin10:12
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shogun-notifier-shogun: Viktor Gal :feature/config.h * 74ffb67 / / (29 files): https://github.com/shogun-toolbox/shogun/commit/74ffb670099a07db4e5d4827dc6c17e744d7ec3e10:12
shogun-notifier-shogun: Remove compiler macros defined via compiler flags10:12
shogun-notifier-shogun: Use <shogun/lib/config.h> and swig_config.h for configure paramters10:12
@wiking74ffb6710:12
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travis-ciit's Viktor Gal's turn to pay the next round of drinks for the massacre he caused in shogun-toolbox/shogun: http://travis-ci.org/shogun-toolbox/shogun/builds/6093154410:17
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shogun-notifier-shogun: Viktor Gal :feature/config.h * d8cea97 / src/shogun/lib/RefCount.h: https://github.com/shogun-toolbox/shogun/commit/d8cea97cae978125e1234f3614ac3e8c5ba1aca610:20
shogun-notifier-shogun: Fix the order of including config.h in RefCount.h10:20
@besser82Building CXX object src/shogun/CMakeFiles/libshogun.dir/lib/RefCount.cpp.o10:22
@besser82cd /home/besser82/shared/git/shogun/build/src/shogun && /usr/bin/ccache /usr/lib64/ccache/c++   -std=c++11 -Wall -Wno-unused-parameter -Wformat -Wformat-security -Wparentheses -Wshadow -Wno-unknown-pragmas -Wno-deprecated   -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m64 -mtune=generic  -O3 -fexpensive-optimizations -frerun-cse-after10:22
@besser82-loop -fcse-follow-jumps -finline-functions -fschedule-insns2 -fthread-jumps -fforce-addr -fstrength-reduce -funroll-loops -mfpmath=sse -fPIC -I/home/besser82/shared/git/shogun/src -I/home/besser82/shared/git/shogun/src/shogun -I/home/besser82/shared/git/shogun/build/src -I/home/besser82/shared/git/shogun/build/src/shogun -isystem /usr/include/eigen3 -I/usr/lib64/../include -I/usr/include/json-c -I/usr/include/libxml2    -o CMakeFiles/libshogun.dir/li10:22
@besser82b/RefCount.cpp.o -c /home/besser82/shared/git/shogun/src/shogun/lib/RefCount.cpp10:22
@besser82In file included from /home/besser82/shared/git/shogun/src/shogun/lib/RefCount.cpp:1:0:10:22
@besser82/home/besser82/shared/git/shogun/src/shogun/lib/RefCount.h:47:19: error: 'atomic' in namespace 'std' does not name a template type10:22
@besser82     volatile std::atomic<int> rc;10:23
@besser82                   ^10:23
@besser82/home/besser82/shared/git/shogun/src/shogun/lib/RefCount.h: In constructor 'shogun::RefCount::RefCount(int32_t)':10:23
@besser82/home/besser82/shared/git/shogun/src/shogun/lib/RefCount.h:25:34: error: class 'shogun::RefCount' does not have any field named 'rc'10:23
@wikingyeah that was fucked up10:23
@besser82  RefCount(int32_t ref_start=0) : rc(ref_start) {}10:23
@besser82                                  ^10:23
@besser82/home/besser82/shared/git/shogun/src/shogun/lib/RefCount.cpp: In member function 'int32_t shogun::RefCount::ref()':10:23
@besser82/home/besser82/shared/git/shogun/src/shogun/lib/RefCount.cpp:8:18: error: 'rc' was not declared in this scope10:23
@wikingfixed it in the last commit10:23
@besser82  int32_t count = rc.fetch_add(1)+1;10:23
@besser82                  ^10:23
@besser82/home/besser82/shared/git/shogun/src/shogun/lib/RefCount.cpp: In member function 'int32_t shogun::RefCount::unref()':10:23
@besser82/home/besser82/shared/git/shogun/src/shogun/lib/RefCount.cpp:21:18: error: 'rc' was not declared in this scope10:23
@besser82  int32_t count = rc.fetch_sub(1)-1;10:23
@besser82                  ^10:23
@besser82/home/besser82/shared/git/shogun/src/shogun/lib/RefCount.cpp: In member function 'int32_t shogun::RefCount::ref_count()':10:23
@wikingsee d8cea9710:23
@besser82/home/besser82/shared/git/shogun/src/shogun/lib/RefCount.cpp:34:18: error: 'rc' was not declared in this scope10:23
@besser82  int32_t count = rc.load();10:23
@wikingtoo long copy-past :)10:23
@besser82                  ^10:23
@besser82src/shogun/CMakeFiles/libshogun.dir/build.make:8119: recipe for target 'src/shogun/CMakeFiles/libshogun.dir/lib/RefCount.cpp.o' failed10:23
@besser82which?10:23
@wiking*paste10:23
@wikingthis refcount trouble10:23
@besser82I see...10:24
@wikingis fixed in commmit d8cea9710:24
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travis-ciit's Viktor Gal's turn to pay the next round of drinks for the massacre he caused in shogun-toolbox/shogun: http://travis-ci.org/shogun-toolbox/shogun/builds/6093154410:26
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@besser82rebuilding...10:30
@besser82takes time, because ccaches are invalid again  :P10:31
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travis-ciit's Viktor Gal's turn to pay the next round of drinks for the massacre he caused in shogun-toolbox/shogun: http://travis-ci.org/shogun-toolbox/shogun/builds/6093202110:42
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@besser82wiking, confirmed... can reproduce...10:46
@wikingbesser82: yeah travis can do it as well :)10:48
@besser82lemme dig into...  ;)10:49
@besser82wiking, ^10:49
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travis-ciit's Viktor Gal's turn to pay the next round of drinks for the massacre he caused in shogun-toolbox/shogun: http://travis-ci.org/shogun-toolbox/shogun/builds/6093202110:51
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travis-ciit's Viktor Gal's turn to pay the next round of drinks for the massacre he caused in shogun-toolbox/shogun: http://travis-ci.org/shogun-toolbox/shogun/builds/6093202110:53
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@wikingbesser82: ok this whole thing got introduced in b6e297c8c4a64c558d30d496df5be084c06686a311:07
@besser82wiking, thx for the info :D11:21
@wikingjust sent a mail to the mailing list11:21
@wikingbecause that patch actually doesn't make any fucking sense :)11:21
@besser82wiking, let's bully yorkelin to refix :P11:21
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shogun-notifier-shogun: lambday :develop * 7bbf957 / / (10 files): https://github.com/shogun-toolbox/shogun/commit/7bbf957df313bbf5f25188422e60c24747c017ee12:58
shogun-notifier-shogun: Added elementwise operators framework in linalg12:58
shogun-notifier-shogun: lambday :develop * 35c609b / / (10 files): https://github.com/shogun-toolbox/shogun/commit/35c609bce2c1d1a7357a5eac96404d69892b391d12:58
shogun-notifier-shogun: Added a benchmark for elementwise operations12:58
shogun-notifier-shogun: Soumyajit De :develop * 7f15f5e / / (12 files): https://github.com/shogun-toolbox/shogun/commit/7f15f5e1ca1fef6507e2a1ce800b9a21366d024012:58
shogun-notifier-shogun: Merge pull request #2830 from lambday/develop12:58
shogun-notifier-shogun:12:58
shogun-notifier-shogun: Added element-wise unary operators in linalg12:58
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travis-ciit's Soumyajit De's turn to pay the next round of drinks for the massacre he caused in shogun-toolbox/shogun: http://travis-ci.org/shogun-toolbox/shogun/builds/6093981213:08
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@lambdaywiking: lisitsyn: hey13:29
lisitsynlambday: hey13:29
@lambdaydo you guys know why index_t is signed int?13:29
shogun-buildbotbuild #2685 of bsd1 - libshogun is complete: Failure [failed test]  Build details are at http://buildbot.shogun-toolbox.org/builders/bsd1%20-%20libshogun/builds/2685  blamelist: lambday <heavensdevil6909@gmail.com>, Soumyajit De <heavensdevil6909@gmail.com>13:30
lisitsynsoeren had some negative opinion on signed13:30
lisitsynunisgned13:30
lisitsynsorry13:30
lisitsynthat's a holywar actually hah13:30
lisitsynpretty common13:30
@lambdayumm.. is there any case when we expect index_t to be -ve? :/13:31
lisitsynnot really13:31
lisitsynbut unsigned can overflow pretty funny13:31
lisitsynI mean when it overflows you get huge positive13:31
lisitsynand you don't really detect that13:32
lisitsynthat was one point I think13:32
@lambdaylisitsyn: actually I added size() method to all matrix and vector types... and for matrices I am returning uint64_t ...13:32
@lambdaynothing too serious but I am getting a bunch of warnings because of that..13:33
lisitsynyeah13:34
lisitsyndon't know :)13:34
lisitsynkeep it maybe13:34
@lambdaylisitsyn: okay..13:35
@lambdaylisitsyn: btw if you have a few mins could you please have just a quick look at https://github.com/shogun-toolbox/shogun/pull/2830/files13:35
lisitsynyeah sure13:36
@lambdayelement-wise operations for linalg13:36
lisitsynlambday: what about these strings?13:37
@lambdaylisitsyn: thanks.. could really use some useful inputs on the design13:37
@lambdaylisitsyn: those are for OpenCL kernel13:37
lisitsynlambday: I have some idea13:37
@lambdaythere are a bunch of predefined element-wise operations... and users can provide custom as well13:38
@lambdaylisitsyn: yeah tell me13:38
lisitsyncan we provide supported operations in some namespace?13:38
lisitsynso they are really objects13:39
@lambdaylisitsyn: shogun::linalg::operations13:39
@lambdayyep - they are13:39
lisitsynno13:39
lisitsynI mean in this strings13:39
lisitsynlambday: are these "fdsfd"+dsadsa just for test?13:39
@lambdaylisitsyn: yes...13:39
@lambdaycheck the Sin.h file13:39
lisitsynoperation.append(data_type+" outer_factor=-2*"+s_pi+"*sqrt(element)*pow("+s_weights+", 2);\n");13:41
lisitsynlambday: ^ will this happen only in test?13:41
@lambdaythat string is just an illustration to show that if we want, we can specify complex, custom element-wise operations as well13:41
lisitsynyes13:41
@lambdaylisitsyn: for predefined operations, users don't need to do anything13:41
lisitsynso can we avoid this string thing a bit?13:42
lisitsynok let me comment13:42
lisitsynin github13:42
@lambdaylisitsyn: yeah...13:42
shogun-buildbotbuild #2643 of deb3 - modular_interfaces is complete: Failure [failed csharp modular]  Build details are at http://buildbot.shogun-toolbox.org/builders/deb3%20-%20modular_interfaces/builds/2643  blamelist: lambday <heavensdevil6909@gmail.com>, Soumyajit De <heavensdevil6909@gmail.com>13:45
shogun-buildbotbuild #1020 of FCRH - libshogun is complete: Failure [failed test]  Build details are at http://buildbot.shogun-toolbox.org/builders/FCRH%20-%20libshogun/builds/1020  blamelist: lambday <heavensdevil6909@gmail.com>, Soumyajit De <heavensdevil6909@gmail.com>13:50
shogun-buildbotbuild #5 of FC22 - libshogun is complete: Failure [failed test]  Build details are at http://buildbot.shogun-toolbox.org/builders/FC22%20-%20libshogun/builds/5  blamelist: lambday <heavensdevil6909@gmail.com>, Soumyajit De <heavensdevil6909@gmail.com>13:50
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lisitsynlambday: https://github.com/shogun-toolbox/shogun/pull/2830/files#r2954697013:51
lisitsynjust some ideas13:52
shogun-buildbotbuild #2460 of deb2 - static_interfaces is complete: Failure [failed octave static]  Build details are at http://buildbot.shogun-toolbox.org/builders/deb2%20-%20static_interfaces/builds/2460  blamelist: lambday <heavensdevil6909@gmail.com>, Soumyajit De <heavensdevil6909@gmail.com>13:52
@lambdaylisitsyn: ah this would be much better13:52
lisitsynyou can implement 2nd thing in a hour I think13:52
lisitsynfirst thing is tougher I think13:53
@lambdaylisitsyn: thinking about that only13:54
lisitsynlambday: was there some trouble with elementwise<sin,..>13:55
lisitsyninstead of elementwise_sin?13:55
@lambdaylisitsyn: well, that's just more of a wrapper.. sin can be done using elementwise<operand_type, sin> as well13:56
lisitsynahh13:57
lisitsyncool13:57
lisitsynmissed that13:57
lisitsynlambday: I don't have other comments for now then :)13:57
@lambdaylisitsyn: the first thing you suggested is so cool!!..13:57
@lambdaylisitsyn: will think a bit13:57
@lambdayno wonder it left Heiko puzzled... all those strings are really messy13:58
lisitsynlambday: about the formatted thing13:58
lisitsynyou know how to implement that?13:58
lisitsynif not I can outline a bit13:58
@lambdaylisitsyn: haven't thought about that yet... I am stuck with the first...13:59
@lambdaybut you suggest...13:59
lisitsynI think 2nd is easier13:59
lisitsyn:)13:59
@lambdaylisitsyn: I think I can make it work14:00
lisitsynyeah14:00
@lambdaylisitsyn: but the first one looks more elegant..14:00
lisitsynI mean you probably spend more time debugging it14:00
lisitsynwhile it is not that important14:01
@lambdaylisitsyn: with the first one?14:01
lisitsynyeah I expect it to be a bit buggier14:01
lisitsynas it is more complex14:01
@lambdayall the ops should ve overloaded14:01
lisitsynyeah14:02
@lambdaylisitsyn: let me think a bit.. I'll get back14:02
@lambdaythanks for my food for thought for today :D14:02
lisitsynhah you're welcome14:05
shogun-buildbotbuild #630 of deb4 - python3 is complete: Failure [failed test python modular]  Build details are at http://buildbot.shogun-toolbox.org/builders/deb4%20-%20python3/builds/630  blamelist: lambday <heavensdevil6909@gmail.com>, Soumyajit De <heavensdevil6909@gmail.com>14:06
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--- Log closed Sun May 03 00:00:09 2015