Open in new window / Try shogun cloud
--- Log opened Tue Aug 23 00:00:17 2016
-!- OXPHOS [4441a916@gateway/web/freenode/ip.68.65.169.22] has joined #shogun00:28
@wikingOXPHOS, ping02:40
@wiking:)02:40
OXPHOSwiking: hey02:41
@wikingOXPHOS,  https://github.com/shogun-toolbox/shogun/blob/feature/linalg_refactor/src/shogun/lib/SGMatrix.h#L39-L4002:43
@wikinghttps://github.com/shogun-toolbox/shogun/blob/feature/linalg_refactor/src/shogun/lib/SGVector.h#L44-L4802:43
@wikingthese are explicitly moved to public02:43
@wikingin develop02:43
OXPHOSwiking: ohhhh i see. sure please move them out. I think the friend class can also be removed02:44
@wikingand the other patch i needed to fix02:45
@wikingthat in euclideandistance the precompute becomes like this https://github.com/shogun-toolbox/shogun/blob/develop/src/shogun/distance/EuclideanDistance.cpp#L83-L9402:47
@wikingi.e. no linalg::dot involved02:47
@wikinganyhow thye are really minor changes02:47
@wikingso if you dont mind02:47
@wikingi'll do now a forcepush to the branch02:47
@wikingthat way the branch gets rebased on develop02:48
OXPHOSwiking: sure please go ahead!02:51
@wikingok?02:51
@wikingok pushing!02:51
@wikingdone02:55
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shogun-notifier-shogun: OXPHOS :feature/linalg_refactor * f4cc9b6 / / (16 files): https://github.com/shogun-toolbox/shogun/commit/f4cc9b6f2362a99cea5a8fbae009c10632929c9a02:56
shogun-notifier-shogun: working version02:56
shogun-notifier-shogun: OXPHOS :feature/linalg_refactor * 7935f14 / / (27 files): https://github.com/shogun-toolbox/shogun/commit/7935f143afdd65371d4eebf0375fdb55dbda0ddd02:56
shogun-notifier-shogun: set default cpubackend02:56
shogun-notifier-shogun: OXPHOS :feature/linalg_refactor * d291a7e / src/shogun/mathematics/linalgrefactor/ (5 files): https://github.com/shogun-toolbox/shogun/commit/d291a7e291da32c67d3eeec37967d3fdb54b937702:56
shogun-notifier-shogun: const02:56
shogun-notifier-shogun: OXPHOS :feature/linalg_refactor * dad5a09 / src/shogun/mathematics/linalgrefactor/ (10 files): https://github.com/shogun-toolbox/shogun/commit/dad5a09e2231af8400d068d2fdd915b5c82e81f802:56
shogun-notifier-shogun: float3202:56
shogun-notifier-shogun: OXPHOS :feature/linalg_refactor * 19f155b / benchmarks/linalg_refactor_benchmark.cpp: https://github.com/shogun-toolbox/shogun/commit/19f155b042f0b360f52ffacfbb56380030e44b6302:56
shogun-notifier-shogun: CPU and GPU dot02:56
shogun-notifier-shogun: OXPHOS :feature/linalg_refactor * e60796d / / (20 files): https://github.com/shogun-toolbox/shogun/commit/e60796deae2bfce72401b552adcda4fbe5395efd02:56
shogun-notifier-shogun: fix style02:56
shogun-notifier-shogun: Linalg-SGVector-add02:56
shogun-notifier-shogun: OXPHOS :feature/linalg_refactor * 1b28003 / / (4 files): https://github.com/shogun-toolbox/shogun/commit/1b2800316c36c982d3ccbdef1f996cee34c4c36402:56
shogun-notifier-shogun: Remove linalg::dot02:56
shogun-notifier-shogun: OXPHOS :feature/linalg_refactor * 8573dbb / src/shogun/mathematics/linalg/LinalgBackendViennacl.h: https://github.com/shogun-toolbox/shogun/commit/8573dbb296acdbf5132b5a26bb5ad49210f8c46502:56
shogun-notifier-shogun: Linalg_ViennaCL_typecast_helper_method02:56
shogun-notifier-shogun: OXPHOS :feature/linalg_refactor * bda14ca / tests/unit/mathematics/linalg/operations/Viennacl_operations_unittest.cc: https://github.com/shogun-toolbox/shogun/commit/bda14caee43639d44bb28fbcdcfbb71af0f8a1e102:56
shogun-notifier-shogun: fix viennacl unittest02:56
shogun-notifier-shogun: OXPHOS :feature/linalg_refactor * 3011d59 / src/shogun/mathematics/linalg/ (3 files): https://github.com/shogun-toolbox/shogun/commit/3011d5929143686db73e1ff30ba56f871e2f29de02:56
shogun-notifier-shogun: add DEFINE_FOR_ALL_PTYPE macro02:56
shogun-notifier-shogun: OXPHOS :feature/linalg_refactor * 3071eb1 / src/shogun/ (6 files): https://github.com/shogun-toolbox/shogun/commit/3071eb1b638cff9871d46eb30568dacfe6f6049502:56
shogun-notifier-shogun: update linalg for SGMatrix compatibility02:56
shogun-notifier-shogun:02:56
shogun-notifier-shogun: - change gpu_vector to gpu_ptr02:56
shogun-notifier-shogun: - change SGVector<> to Container <> in macros02:56
shogun-notifier-shogun: - left methods implementations intact as some methods are not SGMatrix02:56
shogun-notifier-shogun: OXPHOS :feature/linalg_refactor * 4afe07f / src/shogun/mathematics/linalg/LinalgBackendGPUBase.h: https://github.com/shogun-toolbox/shogun/commit/4afe07f7099fce923bee4899677f297ce4d75eb602:56
shogun-notifier-shogun: update LinalgBackendGPUBase macros02:56
shogun-notifier-shogun: OXPHOS :feature/linalg_refactor * 0c66fdf / / (8 files): https://github.com/shogun-toolbox/shogun/commit/0c66fdfa7fadc0ea3b9904dac1db138f30ec0f3e02:56
shogun-notifier-shogun: linalg-sgvector-add-inplace02:56
shogun-notifier-shogun: OXPHOS :feature/linalg_refactor * 52a1e9f / / (6 files): https://github.com/shogun-toolbox/shogun/commit/52a1e9f9229e129d33d05e4d559df2e92878f5cb02:56
shogun-notifier-shogun: linalg-sgmatrix-add02:56
shogun-notifier-shogun: OXPHOS :feature/linalg_refactor * 3c6c849 / / (6 files): https://github.com/shogun-toolbox/shogun/commit/3c6c8499a7776716d325226c1297815ac83a144202:56
shogun-notifier-shogun: linalg-sgvector&sgmatrix-scale02:56
shogun-notifier-shogun: OXPHOS :feature/linalg_refactor * b61e283 / / (7 files): https://github.com/shogun-toolbox/shogun/commit/b61e283d171cd2b3f466f22e389f4a35e01487b802:56
shogun-notifier-shogun: linalg-sgvector&sgmatrix-max02:56
shogun-notifier-shogun: OXPHOS :feature/linalg_refactor * cb815ea / / (6 files): https://github.com/shogun-toolbox/shogun/commit/cb815ea2a18bf51804aa5847cb90df3a2d4c0f9a02:56
shogun-notifier-shogun: linalg-sgvector and sgmatrix-set const02:56
shogun-notifier-shogun: OXPHOS :feature/linalg_refactor * 0b25451 / / (4 files): https://github.com/shogun-toolbox/shogun/commit/0b2545136a109f3b6381a7d7424f20250cda372902:56
shogun-notifier-shogun: linalg-sgvector-range_fill02:56
OXPHOSwiking: thanks!02:59
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travis-ciit's OXPHOS's turn to pay the next round of drinks for the massacre he caused in shogun-toolbox/shogun: https://travis-ci.org/shogun-toolbox/shogun/builds/15432409103:18
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@wikingOXPHOS, ok so just a quick follow up on the issue03:43
@wikingwith the rotational matrix03:43
@wikingOXPHOS, we could change a bit the function declaration of that api03:44
@wikingsay03:44
@wikingvoid rotational_matrix(int32_t size, SGMatrix<T>& matrix);03:44
@wiking?03:44
@wikingthat way we wouldnt have any problem to infer things03:45
@wikingor?03:45
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-!- OXPHOS [4441a916@gateway/web/freenode/ip.68.65.169.22] has joined #shogun05:48
OXPHOSwiking: yes with SGMatrix<T> in param it can infer05:49
OXPHOSsanuj hey sry cannot do pm for some reason..05:51
sanujokay05:51
sanujOXPHOS, did you submit your work on gsoc website?05:52
OXPHOSsanuj: not yet..close05:52
sanuji'm submitting it like this05:53
sanujhttps://gist.github.com/sanuj/62f576cdaa80ecaa781f78b4b9298de405:53
sanujdo you think it's fine?05:53
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OXPHOSsanuj: I don't know the rules - but I think as long as you have enough PRs it should be fine?05:56
sanujyeah05:57
OXPHOSsanuj: I checked some report people shared on facebook and they're kinda elabroated.05:57
OXPHOSsanuj: I have one last part left..but it's more or less like this: https://github.com/OXPHOS/shogun/wiki/GSoC-2016-Final-Report---The-Shogun-Detox05:57
sanujoh wow05:58
sanuji should improve mine :D05:58
@wikingi wouldn't sweat it so much05:59
@wikingalthough i dont know how it is now05:59
@wikingback in my time this wasn't so strict of the code submission05:59
sanujwiking, ohkay05:59
@wikingi mean i would say both are fine06:00
@wikingsanuj: yours is very clean and simple06:00
@wikingOXPHOS: did an essay :)06:00
OXPHOSwiking: :D like README06:00
@wiking:P06:01
sanujoh, i guess i'll just submit06:01
sanuji can edit the gist later too06:01
sanujif required06:01
@wikingindeed06:01
OXPHOSu r right06:02
sanujOXPHOS, are you back in the US?06:02
@wikingoh man merging all these feature branches is going to be fun :)06:03
OXPHOSsanuj: yes..but in california now. will go back to east coast by the end of this week06:03
sanujOXPHOS, remember i got an intern at JHU06:03
OXPHOSsanuj: yes!06:03
sanujthose people are taking a lot of time with the paperwork required for me to apply for visa06:03
sanujit has been almost a month06:03
OXPHOSwiking: I need to revise some stuff based on the tag/plugin change06:04
@wikingthat's alright06:04
OXPHOSsanuj: you're running out of time?06:04
sanujOXPHOS, they told me the delay is due to some US Federal Employment laws that are set to go into place on December 1, 201606:05
sanuji suspect the law is this: https://www.employmentlawwatch.com/2016/05/articles/employment-us/u-s-dol-releases-final-revisions-on-overtime-protections/06:05
sanujOXPHOS, you think they might have second thoughts and cancel the internship invitation as they won't be able to fund me with the new law in place?06:06
sanujbecause in that case i should start looking for new research internships06:06
OXPHOSsanuj: sorry I had no clue about it..they shouldn't, but who knows..I have a friend who got kicked out of graduate school after 1st year because his P.I. "suddenly run out of money" after taking him06:08
OXPHOSsanuj: so I'll suggest you start looking for new internships..as it's gonna take a while anyway06:08
OXPHOSdo they mean they'll start signing the paperwork after Dec 1st...?06:09
sanuji don't think so06:14
sanujOXPHOS, the mail said: they need confirmation from the prof about my appointment, after the knowledge of this new law.06:15
OXPHOSsanuj: oh so I guess you can harass the prof for the confirmation letter and see what he thinks?06:17
sanujOXPHOS, seems like the prof is very busy, people working in the lab did my interview and everything else06:18
sanuji don't like applying for research interns, most of the profs don't even read my mails :)06:19
OXPHOSsanuj: i got no reply from industry either...I guess it's because of my major but I was applying for bioinfo06:20
OXPHOSsanuj: but you have to e-mail the prof since he decides to take you06:20
OXPHOSsanuj: my experience is they'll blame you if you missed something because you're too "polite" or patient with them XD06:21
sanuj:P06:22
sanujokay i'll send a mail today06:22
OXPHOSgood luck!06:22
sanujOXPHOS, thanks! :D06:22
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Saurabh7uhm OXPHOS your link looks broken08:17
OXPHOSSaurabh7: thanks! I changed the title XD https://github.com/OXPHOS/shogun/wiki/GSoC-2016-Final-Report-:-The-Shogun-Detox08:33
Saurabh7ah isee careful with that :)08:34
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shogun-notifier-shogun: OXPHOS :feature/linalg_refactor * 196eb1e / / (3 files): https://github.com/shogun-toolbox/shogun/commit/196eb1e057cc7faa51643d7657007e2a8b2eeb6a10:11
shogun-notifier-shogun: Remove linalg::dot10:11
shogun-notifier-shogun: OXPHOS :feature/linalg_refactor * 3d5816e / src/shogun/mathematics/linalg/LinalgBackendViennacl.h: https://github.com/shogun-toolbox/shogun/commit/3d5816e813a1a4f6933eb4434e25c03db847fa1010:11
shogun-notifier-shogun: Linalg_ViennaCL_typecast_helper_method10:11
shogun-notifier-shogun: OXPHOS :feature/linalg_refactor * 70fdbe7 / tests/unit/mathematics/linalg/operations/Viennacl_operations_unittest.cc: https://github.com/shogun-toolbox/shogun/commit/70fdbe70bf7425d0afb971fc91de9220300f179110:11
shogun-notifier-shogun: fix viennacl unittest10:11
shogun-notifier-shogun: OXPHOS :feature/linalg_refactor * aac7cdf / src/shogun/mathematics/linalg/ (3 files): https://github.com/shogun-toolbox/shogun/commit/aac7cdf656413173e1927d758247eb366fa7b1e810:11
shogun-notifier-shogun: add DEFINE_FOR_ALL_PTYPE macro10:11
shogun-notifier-shogun: OXPHOS :feature/linalg_refactor * 3925825 / src/shogun/ (6 files): https://github.com/shogun-toolbox/shogun/commit/39258250b10772f5dad9eb82bec2c6f4cc94324510:11
shogun-notifier-shogun: update linalg for SGMatrix compatibility10:11
shogun-notifier-shogun:10:11
shogun-notifier-shogun: - change gpu_vector to gpu_ptr10:11
shogun-notifier-shogun: linalg-sum_no_diag10:11
shogun-notifier-shogun: OXPHOS :feature/linalg_refactor * 56db07a / src/shogun/mathematics/linalg/ (3 files): https://github.com/shogun-toolbox/shogun/commit/56db07aea37c763b307683f4fd00a80cadd30f8b10:11
shogun-notifier-shogun: add return value/fix msgs/remove white lines10:11
shogun-notifier-shogun: OXPHOS :feature/linalg_refactor * 2423b14 / / (5 files): https://github.com/shogun-toolbox/shogun/commit/2423b1461ab9c3054fc083fb86e949178d7823ca10:11
shogun-notifier-shogun: linalg-matrix block sum10:11
shogun-notifier-shogun: OXPHOS :feature/linalg_refactor * 138e3fe / / (6 files): https://github.com/shogun-toolbox/shogun/commit/138e3fe679929beb8a2c0a7fea1a8e8ff9bcf42610:11
shogun-notifier-shogun: linalg-sgvector-add-inplace10:11
shogun-notifier-shogun: OXPHOS :feature/linalg_refactor * 3892385 / / (6 files): https://github.com/shogun-toolbox/shogun/commit/3892385e1a9b87f42ebe2cc8dd4a570cc1c3e33410:11
shogun-notifier-shogun: linalg-sgmatrix-add10:11
shogun-notifier-shogun: OXPHOS :feature/linalg_refactor * 65af379 / / (6 files): https://github.com/shogun-toolbox/shogun/commit/65af379fd729ea5497b8d73211a45e01bdf6641e10:11
shogun-notifier-shogun: linalg-sgvector&sgmatrix-scale10:11
shogun-notifier-shogun: OXPHOS :feature/linalg_refactor * 3e2c334 / / (7 files): https://github.com/shogun-toolbox/shogun/commit/3e2c334de523c502c288fdcd27d309790669e56610:11
shogun-notifier-shogun: linalg-sgvector&sgmatrix-max10:11
shogun-notifier-shogun: OXPHOS :feature/linalg_refactor * 8e481f8 / / (6 files): https://github.com/shogun-toolbox/shogun/commit/8e481f89ec775cc423afd14c55a045464e6d4b3810:11
shogun-notifier-shogun: linalg-sgvector and sgmatrix-set const10:11
shogun-notifier-shogun: OXPHOS :feature/linalg_refactor * 86708a8 / / (4 files): https://github.com/shogun-toolbox/shogun/commit/86708a8cd12f15783bcb979c25d8a2a0682b5f6110:11
shogun-notifier-shogun: linalg-sgvector-range_fill10:11
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travis-ciit's OXPHOS's turn to pay the next round of drinks for the massacre he caused in shogun-toolbox/shogun: https://travis-ci.org/shogun-toolbox/shogun/builds/15438200110:59
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Benni_Hi can anybody help me with GP-Classification+MKL? More specifically, I'm not sure if the  kernelweights have been learned.15:33
Saurabh7Benni_: use get_subkernel_weights() maybe15:55
Benni_Im using the VB-inference + gradient based model selection framework (similar to the last chapter in the VB-notebook). However, the subkernel weights are all 1.0 before and after model selection (Im using 3 subkernels). Im not sure whether I have to explicitly specify the kernel weights as hyperparameters, or if they are autodetected and optimized during model selection. If I have to explicitly specify the weights, how do I do this (in 16:24
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--- Log closed Wed Aug 24 00:00:19 2016